Mercurial > repos > iuc > bcftools_csq

comparison test-data/concat.1.b.vcf @ 0:2a6c13f8cc5a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9d03fe38504a35d11660dadb44cb1beee32fcf4e
author iuc
date Thu, 13 Apr 2017 17:47:16 -0400
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-1:000000000000 0:2a6c13f8cc5a
1 ##fileformat=VCFv4.0
2 ##samtoolsVersion=0.2.0-rc10+htslib-0.2.0-rc10
3 ##samtoolsCommand=samtools mpileup -t INFO/DPR -C50 -pm3 -F0.2 -d10000 -ug -r 1:1-1000000 -b mpileup.2014-07-03//lists/chr1-pooled.list -f human_g1k_v37.fasta
4 ##ALT=<ID=X,Description="Represents allele(s) other than observed.">
5 ##bcftools_callVersion=0.2.0-rc10-2-gcd94fde+htslib-0.2.0-rc10
6 ##bcftools_callCommand=call -vm -f GQ -S mpileup.2014-07-03//pooled/1/1:1-1000000.samples -
7 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
8 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
9 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
10 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
11 ##FILTER=<ID=q10,Description="Quality below 10">
12 ##contig=<ID=3,length=62435964>
13 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A
14 3 142 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0/1:409:35
15 3 152 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0/1:245:32
16 3 162 . GA G 628 q10 DP=21 GT:GQ:DP 1/1:21:21
17 3 172 . GAA G 1016 PASS DP=22 GT:GQ:DP 0/1:212:22
18 3 182 . GT G 727 PASS DP=30 GT:GQ:DP 0/1:150:30
19 3 192 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 1/2:12:10