Mercurial > repos > iuc > bcftools_filter
comparison bcftools_filter.xml @ 5:cfd95c205d55 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9d03fe38504a35d11660dadb44cb1beee32fcf4e
author | iuc |
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date | Thu, 13 Apr 2017 17:42:23 -0400 |
parents | f06ccd8eb3f6 |
children | cdb7b4927742 |
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4:f06ccd8eb3f6 | 5:cfd95c205d55 |
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10 <command detect_errors="aggressive"><![CDATA[ | 10 <command detect_errors="aggressive"><![CDATA[ |
11 @PREPARE_ENV@ | 11 @PREPARE_ENV@ |
12 @PREPARE_INPUT_FILE@ | 12 @PREPARE_INPUT_FILE@ |
13 #set $section = $sec_restrict | 13 #set $section = $sec_restrict |
14 @PREPARE_TARGETS_FILE@ | 14 @PREPARE_TARGETS_FILE@ |
15 @PREPARE_REGIONS_FILE@ | |
15 | 16 |
16 bcftools @EXECUTABLE@ | 17 bcftools @EXECUTABLE@ |
17 | 18 |
18 ## Filter section | 19 ## Filter section |
19 #set $section = $sec_filter | 20 #set $section = $sec_filter |
43 @OUTPUT_TYPE@ | 44 @OUTPUT_TYPE@ |
44 @THREADS@ | 45 @THREADS@ |
45 | 46 |
46 ## Primary Input/Outputs | 47 ## Primary Input/Outputs |
47 @INPUT_FILE@ | 48 @INPUT_FILE@ |
48 > "$output_file" | 49 > '$output_file' |
49 ]]> | 50 ]]> |
50 </command> | 51 </command> |
51 <inputs> | 52 <inputs> |
52 <expand macro="macro_input" /> | 53 <expand macro="macro_input" /> |
53 <section name="sec_restrict" expanded="false" title="Restrict to"> | 54 <section name="sec_restrict" expanded="false" title="Restrict to"> |