Mercurial > repos > iuc > bcftools_filter

diff bcftools_filter.xml @ 7:cdb7b4927742 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 2684e1443f03bfe2ae20c31d23817415ec8f7e69
author iuc
date Thu, 21 Feb 2019 16:02:58 -0500
parents cfd95c205d55
children c01a175420f5
line wrap: on
line diff
--- a/bcftools_filter.xml	Tue Dec 12 14:00:43 2017 -0500
+++ b/bcftools_filter.xml	Thu Feb 21 16:02:58 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version='1.0' encoding='utf-8'?>
-<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@">
+<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@">
     <description>Apply fixed-threshold filters</description>
     <macros>
         <token name="@EXECUTABLE@">filter</token>
@@ -114,7 +114,7 @@
         </test>
         <test>
             <param name="input_file" ftype="vcf" value="filter.3.vcf" />
-            <param name="exclude" value="DP=19" />
+            <param name="exclude" value="INFO/DP=19" />
             <param name="output_type" value="v" />
             <output name="output_file">
                 <assert_contents>
@@ -126,7 +126,7 @@
 
         <test>
             <param name="input_file" ftype="vcf" value="filter.3.vcf" />
-            <param name="exclude" value="DP=19" />
+            <param name="exclude" value="INFO/DP=19" />
             <param name="soft_filter" value="XX" />
             <param name="output_type" value="v" />
             <output name="output_file">
@@ -138,7 +138,7 @@
         </test>
         <test>
             <param name="input_file" ftype="vcf" value="filter.3.vcf" />
-            <param name="exclude" value="DP=19" />
+            <param name="exclude" value="INFO/DP=19" />
             <param name="soft_filter" value="XX" />
             <param name="mode" value="+" />
             <param name="output_type" value="v" />
@@ -151,7 +151,7 @@
         </test>
         <test>
             <param name="input_file" ftype="vcf" value="filter.3.vcf" />
-            <param name="exclude" value="DP=19" />
+            <param name="exclude" value="INFO/DP=19" />
             <param name="soft_filter" value="XX" />
             <param name="mode" value="x" />
             <param name="output_type" value="v" />
@@ -164,7 +164,7 @@
         </test>
         <test>
             <param name="input_file" ftype="vcf" value="filter.3.vcf" />
-            <param name="exclude" value="DP=19" />
+            <param name="exclude" value="INFO/DP=19" />
             <param name="soft_filter" value="XX" />
             <param name="mode" value="+,x" />
             <param name="output_type" value="v" />