Mercurial > repos > iuc > bcftools_filter
view test-data/concat.1.b.vcf @ 11:0117c6d2ab96 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 8f3fe2272c80fdb749db49be689681e4d1391bee"
| author | iuc |
|---|---|
| date | Wed, 25 Dec 2019 12:34:35 -0500 |
| parents | 061729be105d |
| children |
line wrap: on
line source
##fileformat=VCFv4.0 ##samtoolsVersion=0.2.0-rc10+htslib-0.2.0-rc10 ##samtoolsCommand=samtools mpileup -t INFO/DPR -C50 -pm3 -F0.2 -d10000 -ug -r 1:1-1000000 -b mpileup.2014-07-03//lists/chr1-pooled.list -f human_g1k_v37.fasta ##ALT=<ID=X,Description="Represents allele(s) other than observed."> ##bcftools_callVersion=0.2.0-rc10-2-gcd94fde+htslib-0.2.0-rc10 ##bcftools_callCommand=call -vm -f GQ -S mpileup.2014-07-03//pooled/1/1:1-1000000.samples - ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> ##FILTER=<ID=q10,Description="Quality below 10"> ##contig=<ID=3,length=62435964> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A 3 142 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0/1:409:35 3 152 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0/1:245:32 3 162 . GA G 628 q10 DP=21 GT:GQ:DP 1/1:21:21 3 172 . GAA G 1016 PASS DP=22 GT:GQ:DP 0/1:212:22 3 182 . GT G 727 PASS DP=30 GT:GQ:DP 0/1:150:30 3 192 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 1/2:12:10