Mercurial > repos > iuc > bcftools_gtcheck
diff test-data/query.filter.vcf @ 0:85dc172ae24f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
| author | iuc |
|---|---|
| date | Wed, 06 Jul 2016 07:03:34 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/query.filter.vcf Wed Jul 06 07:03:34 2016 -0400 @@ -0,0 +1,20 @@ +##fileformat=VCFv4.1 +##INFO=<ID=TEST,Number=1,Type=Integer,Description="Testing Tag"> +##FORMAT=<ID=TT,Number=A,Type=Integer,Description="Testing Tag, with commas and \"escapes\" and escaped escapes combined with \\\"quotes\\\\\""> +##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> +##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood"> +##FILTER=<ID=q10,Description="Quality below 10"> +##FILTER=<ID=test,Description="Testing filter"> +##contig=<ID=1,assembly=b37,length=249250621> +##contig=<ID=2,assembly=b37,length=249250621> +##contig=<ID=3,assembly=b37,length=198022430> +##contig=<ID=4,assembly=b37,length=191154276> +##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B +1 3000150 . C T 59.2 PASS . GT 0 0 +1 3000151 . C T 59.2 PASS . GT 1 0 +1 3000152 . C T 59.2 PASS . GT 0 1 +1 3000153 . C T 59.2 PASS . GT 1 1