Mercurial > repos > iuc > bcftools_gtcheck
view test-data/concat.3.a.vcf @ 8:833ad3665419 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
| author | iuc |
|---|---|
| date | Wed, 05 Jun 2019 13:05:47 -0400 |
| parents | 85dc172ae24f |
| children |
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##fileformat=VCFv4.0 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> ##FILTER=<ID=q10,Description="Quality below 10"> ##contig=<ID=9,length=62435964> ##contig=<ID=1,length=62435964> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B 9 202 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0|1:409:35 0|1 9 212 . C T,G 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1 9 212 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1 9 222 . GA G 628 q10 DP=21 GT:GQ:DP 0|1:21:21 0|1 9 232 . G T 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1 9 232 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1 9 242 . GT G 727 PASS DP=30 GT:GQ:DP 0|1:150:30 0|1 9 252 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1 9 262 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1 1 100 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0|1:409:35 0|1 1 110 . C T,G 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1 1 110 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1 1 120 . GA G 628 q10 DP=21 GT:GQ:DP 0|1:21:21 0|1 1 130 . G T 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1 1 130 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1 1 140 . GT G 727 PASS DP=30 GT:GQ:DP 0|1:150:30 0|1 1 150 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1 1 160 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1