Mercurial > repos > iuc > bcftools_isec

comparison bcftools_isec.xml @ 17:5f27e814a119 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit db275932cbb485cb44ae91e0b421d6f57698db49
author iuc
date Tue, 20 Sep 2022 12:52:08 +0000
parents 81e4014fa809
children d7d1663559e9
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16:81e4014fa809 17:5f27e814a119
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy1"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
3 <description>Create intersections, unions and complements of VCF files</description> 3 <description>Create intersections, unions and complements of VCF files</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">isec</token> 5 <token name="@EXECUTABLE@">isec</token>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
81 <has_text text="3162006" /> 81 <has_text text="3162006" />
82 <not_has_text text="3062915" /> 82 <not_has_text text="3062915" />
83 </assert_contents> 83 </assert_contents>
84 </output> 84 </output>
85 </test> 85 </test>
86 86 <!-- Test region overlap option -->
87 <test>
88 <param name="input_files" ftype="vcf" value="isec.b.vcf,isec.a.vcf" />
89 <param name="nfiles" value="=2" />
90 <param name="output_type" value="v" />
91 <section name="sec_restrict">
92 <param name="regions_overlap" value="1"/>
93 </section>
94 <output name="output_file">
95 <assert_contents>
96 <has_text text="3157410" />
97 <has_text text="3162006" />
98 <not_has_text text="3062915" />
99 </assert_contents>
100 </output>
101 <assert_command>
102 <has_text text="--regions-overlap" />
103 </assert_command>
104 </test>
87 </tests> 105 </tests>
88 <help><![CDATA[ 106 <help><![CDATA[
89 ===================================== 107 =====================================
90 bcftools @EXECUTABLE@ 108 bcftools @EXECUTABLE@
91 ===================================== 109 =====================================