Mercurial > repos > iuc > bcftools_isec

comparison bcftools_isec.xml @ 16:81e4014fa809 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 407e1d8f4dd1a60623783331926098f7f5624841
author iuc
date Fri, 19 Aug 2022 19:53:22 +0000
parents 4afd849c9d35
children 5f27e814a119
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15:97d19c008d15 16:81e4014fa809
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy1">
3 <description>Create intersections, unions and complements of VCF files</description> 3 <description>Create intersections, unions and complements of VCF files</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">isec</token> 5 <token name="@EXECUTABLE@">isec</token>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
56 help="Output positions present in this many (=), this many or more (+), this many or fewer (-), the exact (~) files" > 56 help="Output positions present in this many (=), this many or more (+), this many or fewer (-), the exact (~) files" >
57 <validator type="regex" message="bitmask zero or one">^([=+-]?\d+|~[01]+)?$</validator> 57 <validator type="regex" message="bitmask zero or one">^([=+-]?\d+|~[01]+)?$</validator>
58 </param> 58 </param>
59 <param name="complement" type="boolean" truevalue="--complement" falsevalue="" label="Complement" 59 <param name="complement" type="boolean" truevalue="--complement" falsevalue="" label="Complement"
60 help="Output positions present only in the first file but missing in the others" /> 60 help="Output positions present only in the first file but missing in the others" />
61 <param name="prefix" type="boolean" truevalue="--prefix subset" falsevalue="" checked="false" label="subset each of the input files" 61 <!-- <param name="prefix" type="boolean" truevalue="\-\-prefix subset" falsevalue="" checked="false" label="subset each of the input files"
62 help="(-p)" /> 62 help="(-p)" />-->
63 <param name="write" type="text" label="Files to write" optional="True" 63 <!-- <param name="write" type="text" label="Files to write" optional="True"
64 help="(-write) The output files to write " > 64 help="(-write) The output files to write " >
65 <validator type="regex" message="">^([=+-]?\d+|~[01]+)?$</validator> 65 <validator type="regex" message="">^([=+-]?\d+|~[01]+)?$</validator>
66 </param> 66 </param>-->
67 </section> 67 </section>
68 <expand macro="macro_select_output_type" /> 68 <expand macro="macro_select_output_type" />
69 </inputs> 69 </inputs>
70 <outputs> 70 <outputs>
71 <expand macro="macro_vcf_output"/> 71 <expand macro="macro_vcf_output"/>