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comparison bcftools_merge.xml @ 8:beb87637bee3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
author iuc
date Wed, 05 Jun 2019 13:01:16 -0400
parents 7ba36babba2d
children 9473302f4588
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7:7ba36babba2d 8:beb87637bee3
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy1">
3 <description>Merge multiple VCF/BCF files from non-overlapping sample sets to create one multi-sample file</description> 3 <description>Merge multiple VCF/BCF files from non-overlapping sample sets to create one multi-sample file</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">merge</token> 5 <token name="@EXECUTABLE@">merge</token>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
48 </command> 48 </command>
49 <inputs> 49 <inputs>
50 <expand macro="macro_inputs" /> 50 <expand macro="macro_inputs" />
51 <section name="sec_restrict" expanded="false" title="Restrict to"> 51 <section name="sec_restrict" expanded="false" title="Restrict to">
52 <expand macro="macro_apply_filters" /> 52 <expand macro="macro_apply_filters" />
53 <expand macro="macro_regions" /> 53 <expand macro="macro_restrict" />
54 </section> 54 </section>
55 <section name="sec_merge" expanded="true" title="Merge Options"> 55 <section name="sec_merge" expanded="true" title="Merge Options">
56 <param name="force_samples" type="boolean" truevalue="--force-samples" falsevalue="" label="Force Samples" help="Resolve duplicate sample names" /> 56 <param name="force_samples" type="boolean" truevalue="--force-samples" falsevalue="" label="Force Samples" help="Resolve duplicate sample names" />
57 <param name="info_rules" type="text" label="Info Rules" help="Rules for merging INFO fields (method is one of sum,avg,min,max,join) or &quot;-&quot; to turn off the default [DP:sum,DP4:sum]" /> 57 <param name="info_rules" type="text" label="Info Rules" help="Rules for merging INFO fields (method is one of sum,avg,min,max,join) or &quot;-&quot; to turn off the default [DP:sum,DP4:sum]" />
58 <param name="merge" type="select" label="Merge" optional="True" 58 <param name="merge" type="select" label="Merge" optional="True"