Mercurial > repos > iuc > bcftools_merge

comparison bcftools_merge.xml @ 5:c5c61f2f8757 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9d03fe38504a35d11660dadb44cb1beee32fcf4e
author iuc
date Thu, 13 Apr 2017 17:47:48 -0400
parents df40d7f9737c
children 7ba36babba2d
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4:df40d7f9737c 5:c5c61f2f8757
8 <expand macro="requirements" /> 8 <expand macro="requirements" />
9 <expand macro="version_command" /> 9 <expand macro="version_command" />
10 <command detect_errors="aggressive"><![CDATA[ 10 <command detect_errors="aggressive"><![CDATA[
11 @PREPARE_ENV@ 11 @PREPARE_ENV@
12 @PREPARE_INPUT_FILES@ 12 @PREPARE_INPUT_FILES@
13 #set $section = $sec_restrict
14 @PREPARE_REGIONS_FILE@
15
13 bcftools @EXECUTABLE@ 16 bcftools @EXECUTABLE@
14 17
15 ## Header section 18 ## Header section
16 #set $section = $sec_header 19 #set $section = $sec_header
17 ${section.print_header} 20 ${section.print_header}
38 @OUTPUT_TYPE@ 41 @OUTPUT_TYPE@
39 @THREADS@ 42 @THREADS@
40 43
41 ## Primary Input/Outputs 44 ## Primary Input/Outputs
42 @INPUT_FILES@ 45 @INPUT_FILES@
43 > "$output_file" 46 > '$output_file'
44 ]]> 47 ]]>
45 </command> 48 </command>
46 <inputs> 49 <inputs>
47 <expand macro="macro_inputs" /> 50 <expand macro="macro_inputs" />
48 <section name="sec_restrict" expanded="false" title="Restrict to"> 51 <section name="sec_restrict" expanded="false" title="Restrict to">