Mercurial > repos > iuc > bcftools_mpileup

comparison test-data/merge.3.a.vcf @ 0:12f7c5315f7f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9d03fe38504a35d11660dadb44cb1beee32fcf4e
author iuc
date Thu, 13 Apr 2017 17:41:11 -0400
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-1:000000000000 0:12f7c5315f7f
1 ##fileformat=VCFv4.1
2 ##INFO=<ID=TEST,Number=1,Type=Integer,Description="Testing Tag">
3 ##FORMAT=<ID=TT,Number=A,Type=Integer,Description="Testing Tag, with commas and \"escapes\" and escaped escapes combined with \\\"quotes\\\\\"">
4 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
5 ##INFO=<ID=TR,Number=R,Type=Float,Description="Test tag">
6 ##INFO=<ID=TA,Number=A,Type=Float,Description="Test tag">
7 ##INFO=<ID=TG,Number=G,Type=Float,Description="Test tag">
8 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
9 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
10 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
11 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood">
12 ##FILTER=<ID=q10,Description="Quality below 10">
13 ##FILTER=<ID=test,Description="Testing filter">
14 ##contig=<ID=1,assembly=b37,length=249250621>
15 ##contig=<ID=2,assembly=b37,length=249250621>
16 ##contig=<ID=3,assembly=b37,length=198022430>
17 ##contig=<ID=4,assembly=b37,length=191154276>
18 ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
19 ##readme=AAAAAA
20 ##readme=BBBBBB
21 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
22 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
23 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
24 ##INFO=<ID=STR,Number=1,Type=String,Description="Test string type">
25 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B
26 1 3000000 . C CCG 59.2 PASS AN=4;AC=2;TR=1,2;TA=1;TG=1,2,3 GT:GQ 0/1:245 0/1:245