Mercurial > repos > iuc > bcftools_mpileup

comparison test-data/query.filter.vcf @ 0:12f7c5315f7f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9d03fe38504a35d11660dadb44cb1beee32fcf4e
author iuc
date Thu, 13 Apr 2017 17:41:11 -0400
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-1:000000000000 0:12f7c5315f7f
1 ##fileformat=VCFv4.1
2 ##INFO=<ID=TEST,Number=1,Type=Integer,Description="Testing Tag">
3 ##FORMAT=<ID=TT,Number=A,Type=Integer,Description="Testing Tag, with commas and \"escapes\" and escaped escapes combined with \\\"quotes\\\\\"">
4 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
5 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
6 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
7 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
8 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood">
9 ##FILTER=<ID=q10,Description="Quality below 10">
10 ##FILTER=<ID=test,Description="Testing filter">
11 ##contig=<ID=1,assembly=b37,length=249250621>
12 ##contig=<ID=2,assembly=b37,length=249250621>
13 ##contig=<ID=3,assembly=b37,length=198022430>
14 ##contig=<ID=4,assembly=b37,length=191154276>
15 ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
16 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B
17 1 3000150 . C T 59.2 PASS . GT 0 0
18 1 3000151 . C T 59.2 PASS . GT 1 0
19 1 3000152 . C T 59.2 PASS . GT 0 1
20 1 3000153 . C T 59.2 PASS . GT 1 1