Mercurial > repos > iuc > bcftools_norm

comparison bcftools_norm.xml @ 4:660f8eec689d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 3edcac645f34d5a94884dedaf95c5774f4afc5c7
author iuc
date Sat, 11 Mar 2017 18:00:25 -0500
parents d110fb275304
children e49eeb4059e0
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3:a01eacacfd88 4:660f8eec689d
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.1"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.0">
3 <description>Left-align and normalize indels; check if REF alleles match the reference; split multiallelic sites into multiple rows; recover multiallelics from multiple rows</description> 3 <description>Left-align and normalize indels; check if REF alleles match the reference; split multiallelic sites into multiple rows; recover multiallelics from multiple rows</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">norm</token> 5 <token name="@EXECUTABLE@">norm</token>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
8 <expand macro="requirements" /> 8 <expand macro="requirements">
9 <requirement type="package" version="1.3.1">samtools</requirement>
10 </expand>
9 <expand macro="version_command" /> 11 <expand macro="version_command" />
10 <command detect_errors="aggressive"><![CDATA[ 12 <command detect_errors="aggressive"><![CDATA[
11 @PREPARE_ENV@ 13 @PREPARE_ENV@
12 @PREPARE_INPUT_FILE@ 14 @PREPARE_INPUT_FILE@
13 #set $section = $sec_ref 15 #set $section = $sec_ref