# HG changeset patch
# User iuc
# Date 1721149439 0
# Node ID ee85030e893dcf3e667ed3e7d2e4cdd6e8e78817
# Parent  36960e552ddcad75201e81037bc8ac17e7f6147b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit bfc4ff4956b94885638ae07a2560bac5f84fcca8

diff -r 36960e552ddc -r ee85030e893d bcftools_plugin_color_chrs.xml
--- a/bcftools_plugin_color_chrs.xml	Thu Jan 12 15:33:54 2023 +0000
+++ b/bcftools_plugin_color_chrs.xml	Tue Jul 16 17:03:59 2024 +0000
@@ -67,8 +67,8 @@
         </section>
     </inputs>
     <outputs>
-        <data name="output_data" format="tabular" />
-        <data name="output_svg" format="svg" />
+        <data name="output_data" format="tabular" label="${tool.name} on ${on_string}: tabular" />
+        <data name="output_svg" format="svg" label="${tool.name} on ${on_string}: SVG" />
     </outputs>
     <tests>
         <test expect_num_outputs="2">
diff -r 36960e552ddc -r ee85030e893d macros.xml
--- a/macros.xml	Thu Jan 12 15:33:54 2023 +0000
+++ b/macros.xml	Tue Jul 16 17:03:59 2024 +0000
@@ -174,7 +174,7 @@
   </token>
 
   <xml name="macro_AF_file">
-    <param name="AF_file" argument="--AF-file" type="data" format="tabular" optional="true" label="Allele frequencies file" help="Tab-delimited file containing the columns CHR,POS,REF,ALT,AF" />
+    <param argument="--AF-file" type="data" format="tabular" optional="true" label="Allele frequencies file" help="Tab-delimited file containing the columns CHR,POS,REF,ALT,AF" />
   </xml>
   <!-- This may need to bgzip and tabix the file -->
   <token name="@PREPARE_AF_FILE@">
@@ -191,7 +191,7 @@
   </token>
 
   <xml name="macro_estimate_AF">
-      <param name="estimate_AF" argument="--estimate-AF" type="data" format="data" optional="true" label="Estimate allele frequency" help="Calculate AC,AN counts on the fly, using either all samples (&quot;-&quot;) or samples listed in &lt;file&gt;" />
+      <param argument="--estimate-AF" type="data" format="data" optional="true" label="Estimate allele frequency" help="Calculate AC,AN counts on the fly, using either all samples (&quot;-&quot;) or samples listed in &lt;file&gt;" />
   </xml>
   <token name="@ESTIMATE_AF@">
 #if 'estimate_AF' in $section and $section.estimate_AF: