Mercurial > repos > iuc > bcftools_plugin_fill_an_ac

comparison bcftools_plugin_fill_an_ac.xml @ 5:8e1fbf8baef9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9d03fe38504a35d11660dadb44cb1beee32fcf4e
author iuc
date Thu, 13 Apr 2017 17:48:00 -0400
parents 0124b2fa5f59
children 026a989b7cee
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4:0124b2fa5f59 5:8e1fbf8baef9
11 <command detect_errors="aggressive"><![CDATA[ 11 <command detect_errors="aggressive"><![CDATA[
12 @PREPARE_ENV@ 12 @PREPARE_ENV@
13 @PREPARE_INPUT_FILE@ 13 @PREPARE_INPUT_FILE@
14 #set $section = $sec_restrict 14 #set $section = $sec_restrict
15 @PREPARE_TARGETS_FILE@ 15 @PREPARE_TARGETS_FILE@
16 @PREPARE_REGIONS_FILE@
16 17
17 bcftools plugin @EXECUTABLE@ 18 bcftools plugin @EXECUTABLE@
18 ## VCF input section 19 ## VCF input section
19 #set $section = $sec_restrict 20 #set $section = $sec_restrict
20 @INCLUDE@ 21 @INCLUDE@
25 @OUTPUT_TYPE@ 26 @OUTPUT_TYPE@
26 @THREADS@ 27 @THREADS@
27 28
28 ## Primary Input/Outputs 29 ## Primary Input/Outputs
29 @INPUT_FILE@ 30 @INPUT_FILE@
30 > "$output_file" 31 > '$output_file'
31 ]]> 32 ]]>
32 </command> 33 </command>
33 <inputs> 34 <inputs>
34 <expand macro="macro_input" /> 35 <expand macro="macro_input" />
35 <section name="sec_restrict" expanded="false" title="Restrict to"> 36 <section name="sec_restrict" expanded="false" title="Restrict to">