Mercurial > repos > iuc > bcftools_plugin_fixploidy

annotate test-data/cnv_baf_only.vcf @ 21:f4c8b2e8a808 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 868f4386992de55d25da197660a43a913a09c8df
author iuc
date Wed, 14 Aug 2024 16:40:01 +0000
parents 2978f7d1f150
children
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
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1 ##fileformat=VCFv4.2
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
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2 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
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3 ##FORMAT=<ID=BAF,Number=1,Type=Float,Description="B Allele Frequency">
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4 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT test
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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78 10 858924 exm805329 G A . . . GT:BAF 0/0:0
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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79 10 859047 exm805338 C A . . . GT:BAF 0/0:0
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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80 10 860687 exm805350 C T . . . GT:BAF 0/0:0
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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81 10 860726 exm805354 T C . . . GT:BAF 0/0:0.0000
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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82 10 860970 exm805360 A G . . . GT:BAF 0/0:0.0000
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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83 10 871110 exm805378 G C . . . GT:BAF 0/0:0.0000
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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84 10 871746 exm805386 G A . . . GT:BAF 0/0:0.00239999999999996
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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85 10 875350 exm805392 G A . . . GT:BAF 0/0:0
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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86 10 888899 exm805400 C T . . . GT:BAF 0/0:0.00470000000000004
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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87 10 888916 exm805401 T C . . . GT:BAF 0/0:0.0000
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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88 10 894838 rs12249828 C T . . . GT:BAF 1/0:0.4839
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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89 10 903950 rs11253471 A G . . . GT:BAF 0/1:0.4747
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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90 10 909757 exm805413 G A . . . GT:BAF 0/0:0
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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91 10 909766 exm805415 G A . . . GT:BAF 0/0:0
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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92 10 910074 exm805420 C T . . . GT:BAF 0/0:0.0071
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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93 10 910081 exm805421 C T . . . GT:BAF 0/0:0.002
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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94 10 927331 rs11253489 G A . . . GT:BAF 1/0:0.5325
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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95 10 931618 exm805430 G A . . . GT:BAF 0/0:0
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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96 10 931631 exm805431 C T . . . GT:BAF 0/0:0.00390000000000001
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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97 11 135656 rs10904561 T G . . . GT:BAF 0/1:0.5176
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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98 11 135708 rs7917054 G A . . . GT:BAF 1/0:0.501
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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99 11 178434 rs7089889 T G . . . GT:BAF 0/1:0.4833
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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100 11 188805 rs12146291 A G . . . GT:BAF 0/1:0.4715
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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101 11 203471 rs10903451 A G . . . GT:BAF 0/0:0.0000
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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102 11 252693 rs2379078 T C . . . GT:BAF 0/0:0.0068
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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103 11 273344 rs2448378 A C . . . GT:BAF 0/0:0.0000
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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104 11 279248 rs2496278 C A . . . GT:BAF 1/0:0.6268
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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105 11 291134 rs10508201 T C . . . GT:BAF 0/1:0.4723
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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106 11 293358 exm2249181 A C . . . GT:BAF 0/0:0.0044
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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107 11 313504 rs4880568 C T . . . GT:BAF 1/1:0.9803
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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108 11 317501 rs2018975 C T . . . GT:BAF 0/0:0
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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109 11 323283 rs3740304 A G . . . GT:BAF 0/1:0.5588
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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110 11 326894 rs3125027 T C . . . GT:BAF 0/0:0.0005
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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111 11 327162 exm805022 C T . . . GT:BAF 0/0:0
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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112 11 329493 rs3815985 C A . . . GT:BAF 1/0:0.5187
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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113 11 338553 rs3125031 C T . . . GT:BAF 1/0:0.4696
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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114 11 354301 rs35198327 C T . . . GT:BAF 1/0:0.4929
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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115 11 375475 variant.11341 C T . . . GT:BAF 0/0:0.000199999999999978
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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117 11 387060 rs7904155 G A . . . GT:BAF 1/1:0.9945
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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118 11 390962 exm805090 G A . . . GT:BAF 0/0:9.9999999999989e-05
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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119 11 390983 exm805091 G A . . . GT:BAF 0/0:0
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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121 11 402390 exm805131 G C . . . GT:BAF 0/0:0.0000
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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122 11 403792 exm805136 G C . . . GT:BAF 0/0:0.0000
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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125 11 423555 rs12245012 G A . . . GT:BAF 0/0:0.00149999999999995
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
parents:
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126 11 423671 rs10904067 C T . . . GT:BAF 1/0:0.5566
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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127 11 431161 exm2271240 C T . . . GT:BAF 1/0:0.4838
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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128 11 435971 exm2249233 T C . . . GT:BAF 0/0:0.0000
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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131 11 462885 rs10904173 G A . . . GT:BAF 1/0:0.4819
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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135 11 487973 rs4881313 T C . . . GT:BAF 0/1:0.5628
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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138 11 547567 rs816599 A G . . . GT:BAF 1/1:1.0000
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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139 11 554186 rs12251997 C T . . . GT:BAF 0/0:0.00309999999999999
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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140 11 556129 rs10466270 A G . . . GT:BAF 0/1:0.5142
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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143 11 592283 rs816646 G A . . . GT:BAF 1/0:0.5006
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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146 11 635857 rs7069611 T C . . . GT:BAF 0/0:0.0013
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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148 11 673037 rs816563 C T . . . GT:BAF 1/1:0.9065
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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152 11 749238 rs553326 G T . . . GT:BAF 0/0:0.00229999999999997
2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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2978f7d1f150 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
iuc
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