Mercurial > repos > iuc > bcftools_plugin_mendelian

diff bcftools_plugin_mendelian.xml @ 7:3ff5654b4e7d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 2684e1443f03bfe2ae20c31d23817415ec8f7e69
author iuc
date Thu, 21 Feb 2019 16:01:33 -0500
parents f0747a281247
children 8c5c747e2bb4
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line diff
--- a/bcftools_plugin_mendelian.xml	Tue Dec 12 13:59:17 2017 -0500
+++ b/bcftools_plugin_mendelian.xml	Thu Feb 21 16:01:33 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version='1.0' encoding='utf-8'?>
-<tool name="bcftools @EXECUTABLE@" id="bcftools_plugin_@PLUGIN_ID@" version="@VERSION@">
+<tool name="bcftools @EXECUTABLE@" id="bcftools_plugin_@PLUGIN_ID@" version="@TOOL_VERSION@">
     <description>plugin Count Mendelian consistent / inconsistent genotypes</description>
     <macros>
         <token name="@EXECUTABLE@">mendelian</token>
@@ -25,13 +25,11 @@
 @TARGETS@
 
 @OUTPUT_TYPE@
-@THREADS@
 
 ## Primary Input/Outputs
 @INPUT_FILE@
 
 ## Plugin section
---
 #set $section = $sec_plugin
 #if $section.trios.trios_src == 'trio':
   --trio "${section.trios.mother},${section.trios.father},${section.trios.child}"
@@ -106,7 +104,6 @@
             <param name="output_type" value="v" />
             <output name="output_file">
                 <assert_contents>
-                    <has_text text="mendelian" />
                     <has_text_matching expression="X\t2698769\t.\tAAG\tA\t999\t.\t.\tGT:PL:GP\t./."/>
                 </assert_contents>
             </output>
@@ -122,7 +119,6 @@
             <param name="output_type" value="v" />
             <output name="output_file">
                 <assert_contents>
-                    <has_text text="mendelian" />
                     <not_has_text text="2698758" />
                     <has_text text="2698769" />
                 </assert_contents>