Mercurial > repos > iuc > bcftools_plugin_missing2ref

annotate test-data/concat.2.b.vcf @ 3:4eb3ebd573d3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9df9b52baf62b70fbcfc3fbe965d7197d4e8738e
author iuc
date Tue, 31 Jan 2017 12:45:15 -0500
parents 5e9cf5308e97
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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1 ##fileformat=VCFv4.0
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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3 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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4 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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5 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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6 ##FILTER=<ID=q10,Description="Quality below 10">
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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7 ##contig=<ID=1,length=62435964>
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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8 ##contig=<ID=2,length=62435964>
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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9 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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10 1 100 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0/1:409:35
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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11 1 110 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0/1:245:32
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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12 1 120 . GA G 628 q10 DP=21 GT:GQ:DP 1/1:21:21
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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13 1 130 . G T 1016 PASS DP=22 GT:GQ:DP 0/1:212:22
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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14 1 130 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0/1:212:22
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
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15 1 140 . GT G 727 PASS DP=30 GT:GQ:DP 0/1:150:30
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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16 1 150 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 1/2:12:10
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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17 1 160 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 1/2:12:10
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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18 2 100 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0/1:409:35
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
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19 2 110 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0/1:245:32
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
parents:
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20 2 120 . GA G 628 q10 DP=21 GT:GQ:DP 1/1:21:21
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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21 2 130 . GAA G 1016 PASS DP=22 GT:GQ:DP 0/1:212:22
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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22 2 140 . GT G 727 PASS DP=30 GT:GQ:DP 0/1:150:30
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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23 2 150 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 1/2:12:10
5e9cf5308e97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
iuc
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24 2 160 . TAAAA TA,TC,T 246 PASS DP=10 GT:GQ:DP 0/2:12:10