Mercurial > repos > iuc > bcftools_plugin_missing2ref

comparison bcftools_plugin_missing2ref.xml @ 5:17e1e452297b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 9d03fe38504a35d11660dadb44cb1beee32fcf4e
author iuc
date Thu, 13 Apr 2017 17:46:23 -0400
parents 64b2f65980ea
children 31c096c6b156
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4:64b2f65980ea 5:17e1e452297b
11 <command detect_errors="aggressive"><![CDATA[ 11 <command detect_errors="aggressive"><![CDATA[
12 @PREPARE_ENV@ 12 @PREPARE_ENV@
13 @PREPARE_INPUT_FILE@ 13 @PREPARE_INPUT_FILE@
14 #set $section = $sec_restrict 14 #set $section = $sec_restrict
15 @PREPARE_TARGETS_FILE@ 15 @PREPARE_TARGETS_FILE@
16 @PREPARE_REGIONS_FILE@
16 17
17 bcftools plugin @EXECUTABLE@ 18 bcftools plugin @EXECUTABLE@
18 19
19 ## VCF input section 20 ## VCF input section
20 #set $section = $sec_restrict 21 #set $section = $sec_restrict
34 #if $section.phased or $section.major: 35 #if $section.phased or $section.major:
35 -- 36 --
36 ${section.phased} 37 ${section.phased}
37 ${section.major} 38 ${section.major}
38 #end if 39 #end if
39 > "$output_file" 40 > '$output_file'
40 ]]> 41 ]]>
41 </command> 42 </command>
42 <inputs> 43 <inputs>
43 <expand macro="macro_input" /> 44 <expand macro="macro_input" />
44 <section name="sec_restrict" expanded="false" title="Restrict to"> 45 <section name="sec_restrict" expanded="false" title="Restrict to">