Mercurial > repos > iuc > bcftools_plugin_missing2ref

comparison test-data/concat.3.a.vcf @ 0:5e9cf5308e97 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
author iuc
date Wed, 06 Jul 2016 07:07:16 -0400
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-1:000000000000 0:5e9cf5308e97
1 ##fileformat=VCFv4.0
2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
3 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
4 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
5 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
6 ##FILTER=<ID=q10,Description="Quality below 10">
7 ##contig=<ID=9,length=62435964>
8 ##contig=<ID=1,length=62435964>
9 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B
10 9 202 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0|1:409:35 0|1
11 9 212 . C T,G 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1
12 9 212 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1
13 9 222 . GA G 628 q10 DP=21 GT:GQ:DP 0|1:21:21 0|1
14 9 232 . G T 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1
15 9 232 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1
16 9 242 . GT G 727 PASS DP=30 GT:GQ:DP 0|1:150:30 0|1
17 9 252 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1
18 9 262 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1
19 1 100 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0|1:409:35 0|1
20 1 110 . C T,G 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1
21 1 110 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1
22 1 120 . GA G 628 q10 DP=21 GT:GQ:DP 0|1:21:21 0|1
23 1 130 . G T 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1
24 1 130 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1
25 1 140 . GT G 727 PASS DP=30 GT:GQ:DP 0|1:150:30 0|1
26 1 150 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1
27 1 160 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1