Mercurial > repos > iuc > bcftools_plugin_missing2ref

comparison test-data/fixploidy.vcf @ 0:5e9cf5308e97 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
author iuc
date Wed, 06 Jul 2016 07:07:16 -0400
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-1:000000000000 0:5e9cf5308e97
1 ##fileformat=VCFv4.1
2 ##contig=<ID=1,assembly=b37,length=249250621>
3 ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
4 ##INFO=<ID=FLAG,Number=0,Type=Flag,Description="Test type">
5 ##INFO=<ID=IINT,Number=1,Type=Integer,Description="Test type">
6 ##INFO=<ID=IFLT,Number=1,Type=Float,Description="Test type">
7 ##INFO=<ID=ISTR,Number=1,Type=String,Description="Test type">
8 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
9 ##FORMAT=<ID=FINT,Number=1,Type=Integer,Description="Test type">
10 ##FORMAT=<ID=FFLT,Number=1,Type=Float,Description="Test type">
11 ##FORMAT=<ID=FSTR,Number=1,Type=String,Description="Test type">
12 ##FILTER=<ID=q11,Description="Quality below 10">
13 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B C
14 1 3000001 xx C CT 11 PASS FLAG;IINT=11;IFLT=1.1;ISTR=xxx GT:FINT:FFLT:FSTR 0/0:11:1.1:xxx 0/0:11:1.1:x 0|0:11:1.1:x
15 1 3000002 . C CTT . . . GT ./. ./. .|.
16 1 3000003 xx C CTTT 11 q11 FLAG;IINT=.;IFLT=.;ISTR=. GT:FINT:FFLT:FSTR 0/0:.:.:. 0/0:.:.:. 0|0:.:.:.
17 1 3000004 xx C CTTTT 11 q11 FLAG;IINT=11;IFLT=1.1;ISTR=xxx GT:FINT:FFLT:FSTR 0/0:11:1.1:x 0/0:11:1.1:xxx 0|0:11:1.1:xxx