Mercurial > repos > iuc > bcftools_plugin_missing2ref

diff test-data/stats.a.vcf @ 8:ed003195e914 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
author iuc
date Wed, 05 Jun 2019 13:08:08 -0400
parents 5e9cf5308e97
children
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--- a/test-data/stats.a.vcf	Thu Feb 21 16:02:30 2019 -0500
+++ b/test-data/stats.a.vcf	Wed Jun 05 13:08:08 2019 -0400
@@ -3,6 +3,6 @@
 ##contig=<ID=1,assembly=b37,length=249250621>
 ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A	B	C
-1	1000	.	G	A	.	PASS	.	GT	0/0	0/1	1/1
-1	1001	.	G	A	.	PASS	.	GT	0/0	0/1	1/1
-1	1002	.	G	A	.	PASS	.	GT	0/0	0/1	1/1
+1	1000	.	G	A	.	PASS	.	GT	0|0	0|1	1|1
+1	1001	.	G	A	.	PASS	.	GT	0/0	0|1	1|1
+1	1002	.	G	A	.	PASS	.	GT	0|0	0|1	1|1