Mercurial > repos > iuc > bcftools_plugin_missing2ref
view test-data/annotate3.vcf @ 8:ed003195e914 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit e648d86d550ddf2eb67237752320c390b3a780e5
| author | iuc |
|---|---|
| date | Wed, 05 Jun 2019 13:08:08 -0400 |
| parents | 5e9cf5308e97 |
| children |
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##fileformat=VCFv4.1 ##FILTER=<ID=PASS,Description="All filters passed"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype LK"> ##FORMAT=<ID=X,Number=1,Type=Integer,Description="rmme"> ##FORMAT=<ID=Y,Number=1,Type=Integer,Description="rmme"> ##FORMAT=<ID=AA,Number=1,Type=Integer,Description="rmme"> ##INFO=<ID=AA,Number=1,Type=Integer,Description="rmme"> ##INFO=<ID=BB,Number=1,Type=Integer,Description="rmme"> ##INFO=<ID=X,Number=1,Type=Integer,Description="rmme"> ##INFO=<ID=Y,Number=1,Type=Integer,Description="rmme"> ##FILTER=<ID=fltA,Description="rmme"> ##FILTER=<ID=fltB,Description="rmme"> ##FILTER=<ID=fltX,Description="rmme"> ##FILTER=<ID=fltY,Description="rmme"> ##contig=<ID=1,assembly=b37,length=249250621> ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B 1 3000000 id C . 20 . AA=1;BB=2;X=3;Y=4 GT:X:PL:Y:AA 0/1:1:2:3:1 0/1:1:2:3:1 1 3000001 id C . 20 PASS AA=1;BB=2;X=3;Y=4 GT:X:PL:Y:AA 0/1:1:2:3:1 0/1:1:2:3:1 1 3000002 id C . 20 fltY;fltA;fltB;fltX BB=2;X=3;Y=4;AA=1 GT:Y:X:PL:AA 0/1:3:1:2:1 0/1:3:1:2:1