Mercurial > repos > iuc > bcftools_plugin_tag2tag

comparison bcftools_plugin_tag2tag.xml @ 14:8aa9d9b14bcd draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 833751f38971a1957a9e16d09acf62cdf6048ad9"
author iuc
date Tue, 19 Oct 2021 15:34:03 +0000
parents f272b8ba0983
children f35cc95efb32
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13:f272b8ba0983 14:8aa9d9b14bcd
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_plugin_@PLUGIN_ID@" version="@TOOL_VERSION@"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_plugin_@PLUGIN_ID@" version="@TOOL_VERSION@+galaxy1">
3 <description>plugin Convert between similar tags, such as GL and GP</description> 3 <description>plugin Convert between similar tags, such as GL and GP</description>
4 <expand macro="bio_tools" /> 4 <expand macro="bio_tools" />
5 <macros> 5 <macros>
6 <token name="@EXECUTABLE@">tag2tag</token> 6 <token name="@EXECUTABLE@">tag2tag</token>
7 <token name="@PLUGIN_ID@">tag2tag</token> 7 <token name="@PLUGIN_ID@">tag2tag</token>
55 <option value="--gp-to-gl" selected="true">convert FORMAT/GP to FORMAT/GL</option> 55 <option value="--gp-to-gl" selected="true">convert FORMAT/GP to FORMAT/GL</option>
56 <option value="--gp-to-gt" selected="true">convert FORMAT/GP to FORMAT/GT (by taking argmax of GP)</option> 56 <option value="--gp-to-gt" selected="true">convert FORMAT/GP to FORMAT/GT (by taking argmax of GP)</option>
57 <option value="--gl-to-pl">convert FORMAT/GL to FORMAT/PL</option> 57 <option value="--gl-to-pl">convert FORMAT/GL to FORMAT/PL</option>
58 <option value="--pl-to-gl">convert FORMAT/PL to FORMAT/GL</option> 58 <option value="--pl-to-gl">convert FORMAT/PL to FORMAT/GL</option>
59 </param> 59 </param>
60 <param name="replace" type="boolean" truevalue="--replace" falsevalue="" checked="true" label="drop the source tag" help="(\-\-replace)" /> 60 <param argument="--replace" type="boolean" truevalue="--replace" falsevalue="" checked="true" label="Drop the source tag" />
61 <param name="" type="float" value=".1" min="0." max="1.0" optional="true" label="threshold for GP to GT hard-call" help="(\-\-threshold float)" /> 61 <param argument="--threshold" type="float" value=".1" min="0." max="1.0" optional="true" label="Threshold for GP to GT hard-call" />
62 </section> 62 </section>
63 <expand macro="macro_select_output_type" /> 63 <expand macro="macro_select_output_type" />
64 </inputs> 64 </inputs>
65 <outputs> 65 <outputs>
66 <expand macro="macro_vcf_output" /> 66 <expand macro="macro_vcf_output" />