Mercurial > repos > iuc > bcftools_plugin_vcf2sex

comparison test-data/annotate3.vcf @ 0:5e036e905f69 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit ef90c4602bdb83ea7455946c9d175ea27284e643
author iuc
date Wed, 06 Jul 2016 07:07:59 -0400
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-1:000000000000 0:5e036e905f69
1 ##fileformat=VCFv4.1
2 ##FILTER=<ID=PASS,Description="All filters passed">
3 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
4 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype LK">
5 ##FORMAT=<ID=X,Number=1,Type=Integer,Description="rmme">
6 ##FORMAT=<ID=Y,Number=1,Type=Integer,Description="rmme">
7 ##FORMAT=<ID=AA,Number=1,Type=Integer,Description="rmme">
8 ##INFO=<ID=AA,Number=1,Type=Integer,Description="rmme">
9 ##INFO=<ID=BB,Number=1,Type=Integer,Description="rmme">
10 ##INFO=<ID=X,Number=1,Type=Integer,Description="rmme">
11 ##INFO=<ID=Y,Number=1,Type=Integer,Description="rmme">
12 ##FILTER=<ID=fltA,Description="rmme">
13 ##FILTER=<ID=fltB,Description="rmme">
14 ##FILTER=<ID=fltX,Description="rmme">
15 ##FILTER=<ID=fltY,Description="rmme">
16 ##contig=<ID=1,assembly=b37,length=249250621>
17 ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
18 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B
19 1 3000000 id C . 20 . AA=1;BB=2;X=3;Y=4 GT:X:PL:Y:AA 0/1:1:2:3:1 0/1:1:2:3:1
20 1 3000001 id C . 20 PASS AA=1;BB=2;X=3;Y=4 GT:X:PL:Y:AA 0/1:1:2:3:1 0/1:1:2:3:1
21 1 3000002 id C . 20 fltY;fltA;fltB;fltX BB=2;X=3;Y=4;AA=1 GT:Y:X:PL:AA 0/1:3:1:2:1 0/1:3:1:2:1