Mercurial > repos > iuc > bcftools_query_list_samples
view bcftools_query_list_samples.xml @ 6:adee7e8b746f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 880627162bdeb854582e9f58ddab451de35feba3
author | iuc |
---|---|
date | Tue, 12 Dec 2017 14:01:58 -0500 |
parents | 5272100dd270 |
children | 473f814b74d5 |
line wrap: on
line source
<?xml version='1.0' encoding='utf-8'?> <tool name="bcftools List Samples" id="bcftools_@EXECUTABLE@_list_samples" version="@VERSION@"> <description>in VCF/BCF file</description> <macros> <token name="@EXECUTABLE@">query</token> <import>macros.xml</import> </macros> <expand macro="requirements" /> <expand macro="version_command" /> <command detect_errors="aggressive"><![CDATA[ @PREPARE_ENV@ @PREPARE_INPUT_FILE@ bcftools @EXECUTABLE@ --list-samples ## Primary Input/Outputs @INPUT_FILE@ | tee $output_file | tr '\n' ',' ]]> </command> <inputs> <expand macro="macro_input" /> </inputs> <outputs> <data name="output_file" format="tabular"/> </outputs> <tests> <test> <param name="input_file" ftype="vcf" value="query.vcf" /> <output name="output_file"> <assert_contents> <has_text text="C" /> <not_has_text text="A" /> </assert_contents> </output> </test> </tests> <help><![CDATA[ ===================================== bcftools List Samples @EXECUTABLE@ ===================================== Lists Samples from a VCF/BCF file @BCFTOOLS_MANPAGE@#@EXECUTABLE@ @BCFTOOLS_WIKI@ ]]> </help> <expand macro="citations" /> </tool>