Mercurial > repos > iuc > bcftools_reheader

diff macros.xml @ 6:d43eb39b989e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 880627162bdeb854582e9f58ddab451de35feba3
author iuc
date Tue, 12 Dec 2017 13:57:00 -0500
parents e587eb7d99a3
children 2a9cfd8f653e
line wrap: on
line diff
--- a/macros.xml	Thu Apr 13 17:47:03 2017 -0400
+++ b/macros.xml	Tue Dec 12 13:57:00 2017 -0500
@@ -49,7 +49,7 @@
   bgzip -c '$input_file' > $input_vcf &&
   bcftools index $input_vcf &&
 #elif $input_file.is_of_type('vcf_bgzip')
-  ln -s '$input_file' $input_vcf
+  ln -s '$input_file' $input_vcf &&
 #elif $input_file.is_of_type('bcf')
   #set $input_vcf = 'input.bcf'
   ln -s '$input_file' $input_vcf &&
@@ -59,7 +59,7 @@
     bcftools index $input_vcf &&
   #end if
 #elif $input_file.is_of_type('bcf_bgzip')
-  ln -s '$input_file' $input_vcf
+  ln -s '$input_file' $input_vcf &&
 #end if
 ]]>
   </token>