# HG changeset patch
# User iuc
# Date 1475511491 14400
# Node ID 6ed9d03452ad066848f0bb666b6865972075b4c5
# Parent  40d8186eb3bb21aa070fb9249a5efd50686ff7d6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 44bebb8a97d64015cbba59f0663e2541035112b6

diff -r 40d8186eb3bb -r 6ed9d03452ad bcftools_roh.xml
--- a/bcftools_roh.xml	Wed Jul 13 11:00:47 2016 -0400
+++ b/bcftools_roh.xml	Mon Oct 03 12:18:11 2016 -0400
@@ -1,5 +1,5 @@
 <?xml version='1.0' encoding='utf-8'?>
-<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.0">
+<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@.1">
     <description>HMM model for detecting runs of autozygosity</description>
     <macros>
         <token name="@EXECUTABLE@">roh</token>
@@ -79,8 +79,8 @@
             <param name="rec_rate" type="float" label="Rec Rate" optional="True" help="Constant recombination rate per bp" />
         </section>
         <section name="sec_hmm" expanded="true" title="HMM Options">
-            <param name="hw_to_az" type="float" label="Hw To Az" default="6.7e-8" optional="True" help="P(AZ|HW) transition probability from HW (Hardy-Weinberg) to AZ (autozygous) state" />
-            <param name="az_to_hw" type="float" label="Az To Hw" default="5e-9" optional="True" help="P(HW|AZ) transition probability from AZ to HW state" />
+            <param name="hw_to_az" type="float" label="Hw To Az" value="6.7e-8" optional="True" help="P(AZ|HW) transition probability from HW (Hardy-Weinberg) to AZ (autozygous) state" />
+            <param name="az_to_hw" type="float" label="Az To Hw" value="5e-9" optional="True" help="P(HW|AZ) transition probability from AZ to HW state" />
             <param name="viterbi_training" type="boolean" truevalue="--viterbi-training" falsevalue="" label="Viterbi Training" help="Perform Viterbi training to estimate transition probabilities" />
         </section>
     </inputs>
diff -r 40d8186eb3bb -r 6ed9d03452ad macros.xml
--- a/macros.xml	Wed Jul 13 11:00:47 2016 -0400
+++ b/macros.xml	Mon Oct 03 12:18:11 2016 -0400
@@ -339,7 +339,6 @@
         </when>
         <when value="targets_file">
             <expand macro="macro_targets_file">
-               <optional>true</optional>
             </expand>
         </when>
     </conditional>