Mercurial > repos > iuc > bcftools_view

comparison bcftools_view.xml @ 17:38d75661c235 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 407e1d8f4dd1a60623783331926098f7f5624841
author iuc
date Fri, 19 Aug 2022 20:04:14 +0000
parents e1a2389af238
children 3ca3de4e5291
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16:e15e4acae7ef 17:38d75661c235
242 <test> 242 <test>
243 <param name="input_file" ftype="vcf" value="view.vcf" /> 243 <param name="input_file" ftype="vcf" value="view.vcf" />
244 <param name="known_or_novel" value="--novel" /> 244 <param name="known_or_novel" value="--novel" />
245 <param name="private" value="--exclude-private" /> 245 <param name="private" value="--exclude-private" />
246 <param name="samples" value="NA00003" /> 246 <param name="samples" value="NA00003" />
247 <param name="regions" value="20,Y" /> 247 <conditional name="regions">
248 <param name="regions_src" value="regions"/>
249 <repeat name="regions">
250 <param name="chrom" value="Y" />
251 <param name="start" value="20" />
252 </repeat>
253 </conditional>
248 <param name="output_type" value="v" /> 254 <param name="output_type" value="v" />
249 <output name="output_file"> 255 <output name="output_file">
250 <assert_contents> 256 <assert_contents>
251 <has_text text="8657215" /> 257 <has_text text="8657215" />
252 <not_has_text text="rs6111385" /> 258 <not_has_text text="rs6111385" />
253 </assert_contents> 259 </assert_contents>
254 </output> 260 </output>
261 <assert_command>
262 <has_text text="--regions 'Y:20-'"/>
263 </assert_command>
255 </test> 264 </test>
256 <test> 265 <test>
257 <param name="input_file" ftype="vcf" value="view.vcf" /> 266 <param name="input_file" ftype="vcf" value="view.vcf" />
258 <param name="known_or_novel" value="--known" /> 267 <param name="known_or_novel" value="--known" />
259 <param name="private" value="--exclude-private" /> 268 <param name="private" value="--exclude-private" />