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comparison bcftools_view.xml @ 7:d1f8f55f564d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 2684e1443f03bfe2ae20c31d23817415ec8f7e69
author iuc
date Thu, 21 Feb 2019 16:07:33 -0500
parents 741a08398a04
children ed94a3dccad0
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6:3a233c8eb814 7:d1f8f55f564d
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@"> 2 <tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@">
3 <description>VCF/BCF conversion, view, subset and filter VCF/BCF files</description> 3 <description>VCF/BCF conversion, view, subset and filter VCF/BCF files</description>
4 <macros> 4 <macros>
5 <token name="@EXECUTABLE@">view</token> 5 <token name="@EXECUTABLE@">view</token>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 <xml name="macro_types_options"> 7 <xml name="macro_types_options">
216 <not_has_text text="rs6111385" /> 216 <not_has_text text="rs6111385" />
217 </assert_contents> 217 </assert_contents>
218 </output> 218 </output>
219 </test> 219 </test>
220 <test> 220 <test>
221 <param name="input_file" ftype="bcf" value="view.bcf" />
222 <param name="min_ac" value="1" />
223 <param name="max_ac" value="1" />
224 <param name="samples" value="NA00002" />
225 <param name="types" value="snps" />
226 <param name="output_type" value="v" />
227 <output name="output_file">
228 <assert_contents>
229 <has_text text="rs2298108" />
230 <not_has_text text="rs6111385" />
231 </assert_contents>
232 </output>
233 </test>
234 <test>
221 <param name="input_file" ftype="vcf" value="view.vcf" /> 235 <param name="input_file" ftype="vcf" value="view.vcf" />
222 <param name="known_or_novel" value="--novel" /> 236 <param name="known_or_novel" value="--novel" />
223 <param name="private" value="--exclude-private" /> 237 <param name="private" value="--exclude-private" />
224 <param name="samples" value="NA00003" /> 238 <param name="samples" value="NA00003" />
225 <param name="regions" value="20,Y" /> 239 <param name="regions" value="20,Y" />