Mercurial > repos > iuc > bcftools_view

diff bcftools_view.xml @ 17:38d75661c235 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 407e1d8f4dd1a60623783331926098f7f5624841
author iuc
date Fri, 19 Aug 2022 20:04:14 +0000
parents e1a2389af238
children 3ca3de4e5291
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--- a/bcftools_view.xml	Sat Jul 23 13:47:28 2022 +0000
+++ b/bcftools_view.xml	Fri Aug 19 20:04:14 2022 +0000
@@ -244,7 +244,13 @@
             <param name="known_or_novel" value="--novel" />
             <param name="private" value="--exclude-private" />
             <param name="samples" value="NA00003" />
-            <param name="regions" value="20,Y" />
+            <conditional name="regions">
+                <param name="regions_src" value="regions"/>
+                <repeat name="regions">
+                    <param name="chrom" value="Y" />
+                    <param name="start" value="20" />
+                </repeat>
+            </conditional>
             <param name="output_type" value="v" />
             <output name="output_file">
                 <assert_contents>
@@ -252,6 +258,9 @@
                     <not_has_text text="rs6111385" />
                 </assert_contents>
             </output>
+            <assert_command>
+                <has_text text="--regions 'Y:20-'"/>
+            </assert_command>
         </test>
         <test>
             <param name="input_file" ftype="vcf" value="view.vcf" />