Mercurial > repos > iuc > bcftools_view
diff bcftools_view.xml @ 18:3ca3de4e5291 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit db275932cbb485cb44ae91e0b421d6f57698db49
author | iuc |
---|---|
date | Tue, 20 Sep 2022 13:04:09 +0000 |
parents | 38d75661c235 |
children | abc3ced31cd1 |
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--- a/bcftools_view.xml Fri Aug 19 20:04:14 2022 +0000 +++ b/bcftools_view.xml Tue Sep 20 13:04:09 2022 +0000 @@ -1,5 +1,5 @@ <?xml version='1.0' encoding='utf-8'?> -<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@"> +<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>VCF/BCF conversion, view, subset and filter VCF/BCF files</description> <macros> <token name="@EXECUTABLE@">view</token> @@ -375,6 +375,27 @@ </assert_contents> </output> </test> + <!-- Test region overlap option --> + <test> + <param name="input_file" ftype="vcf" value="view.vcf" /> + <param name="min_ac" value="1" /> + <param name="max_ac" value="1" /> + <param name="samples" value="NA00002" /> + <param name="types" value="snps" /> + <param name="output_type" value="v" /> + <section name="sec_restrict"> + <param name="regions_overlap" value="1"/> + </section> + <output name="output_file"> + <assert_contents> + <has_text text="rs2298108" /> + <not_has_text text="rs6111385" /> + </assert_contents> + </output> + <assert_command> + <has_text text="--regions-overlap" /> + </assert_command> + </test> </tests> <help><![CDATA[ =====================================