Mercurial > repos > iuc > bcftools_view

diff bcftools_view.xml @ 7:d1f8f55f564d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 2684e1443f03bfe2ae20c31d23817415ec8f7e69
author iuc
date Thu, 21 Feb 2019 16:07:33 -0500
parents 741a08398a04
children ed94a3dccad0
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line diff
--- a/bcftools_view.xml	Tue Dec 12 14:03:51 2017 -0500
+++ b/bcftools_view.xml	Thu Feb 21 16:07:33 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version='1.0' encoding='utf-8'?>
-<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@">
+<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@">
     <description>VCF/BCF conversion, view, subset and filter VCF/BCF files</description>
     <macros>
         <token name="@EXECUTABLE@">view</token>
@@ -218,6 +218,20 @@
             </output>
         </test>
         <test>
+            <param name="input_file" ftype="bcf" value="view.bcf" />
+            <param name="min_ac" value="1" />
+            <param name="max_ac" value="1" />
+            <param name="samples" value="NA00002" />
+            <param name="types" value="snps" />
+            <param name="output_type" value="v" />
+            <output name="output_file">
+                <assert_contents>
+                    <has_text text="rs2298108" />
+                    <not_has_text text="rs6111385" />
+                </assert_contents>
+            </output>
+        </test>
+        <test>
             <param name="input_file" ftype="vcf" value="view.vcf" />
             <param name="known_or_novel" value="--novel" />
             <param name="private" value="--exclude-private" />