view test-data/merge.4.b.vcf @ 9:338a2860a20c draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 942ca2971ae6a72e548fde6186c6408a1e236653
author iuc
date Mon, 29 Jul 2019 17:57:42 -0400
parents 94f98eb08abc
children
line wrap: on
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##fileformat=VCFv4.1
##INFO=<ID=TEST,Number=1,Type=Integer,Description="Testing Tag">
##FORMAT=<ID=TT,Number=A,Type=Integer,Description="Testing Tag, with commas and \"escapes\" and escaped escapes combined with \\\"quotes\\\\\"">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=TR,Number=R,Type=Float,Description="Test tag">
##INFO=<ID=TA,Number=A,Type=Float,Description="Test tag">
##INFO=<ID=TG,Number=G,Type=Float,Description="Test tag">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood">
##FORMAT=<ID=XR,Number=R,Type=Integer,Description="Some description">
##FORMAT=<ID=XA,Number=A,Type=Integer,Description="Some description">
##FORMAT=<ID=XG,Number=G,Type=Integer,Description="Some description">
##FILTER=<ID=q10,Description="Quality below 10">
##FILTER=<ID=test,Description="Testing filter">
##contig=<ID=1,assembly=b37,length=249250621>
##contig=<ID=2,assembly=b37,length=249250621>
##contig=<ID=3,assembly=b37,length=198022430>
##contig=<ID=4,assembly=b37,length=191154276>
##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
##readme=AAAAAA
##readme=BBBBBB
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=STR,Number=1,Type=String,Description="Test string type">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	C	D
1	3000000	.	C	A	59.2	PASS	AN=4;AC=2	GT:GQ	0/1:245	0/1:245
1	3000000	id1	C	A	59.2	PASS	AN=4;AC=2;TR=1,2;TA=1;TG=1,2,3	GT:GQ:XR:XG:XA	0/1:245:4,5:3,4,5:5	0/1:245:6,7:6,7,8:7
1	3000002	id3	C	A	59.2	PASS	AN=4;AC=2;TR=1,2;TA=1;TG=1,2,3	GT:GQ:XR:XG:XA	0/1:245:.	0/1:245:1,2:1,2,3:2
1	3000002	id2	C	A	59.2	PASS	AN=4;AC=2;TR=1,2;TA=1;TG=1,2,3	GT:GQ:XR:XG:XA	0/1:245:.	0/1:245:.:.:.
1	3000002	.	C	A	59.2	PASS	AN=4;AC=2	GT:GQ	0/1:245	0/1:245