Mercurial > repos > iuc > bcftools_view

changeset 21:abc3ced31cd1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 96c0663be587b73bdf09ddf060cb559f28f9eba7
author iuc
date Thu, 12 Jan 2023 15:37:29 +0000
parents 59fa8742285e
children c2ab91a0d506
files bcftools_view.xml macros.xml
diffstat 2 files changed, 20 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/bcftools_view.xml	Thu Sep 29 08:49:13 2022 +0000
+++ b/bcftools_view.xml	Thu Jan 12 15:37:29 2023 +0000
@@ -244,13 +244,15 @@
             <param name="known_or_novel" value="--novel" />
             <param name="private" value="--exclude-private" />
             <param name="samples" value="NA00003" />
-            <conditional name="regions">
-                <param name="regions_src" value="regions"/>
-                <repeat name="regions">
-                    <param name="chrom" value="Y" />
-                    <param name="start" value="20" />
-                </repeat>
-            </conditional>
+            <section name="sec_restrict">
+                <conditional name="regions">
+                    <param name="regions_src" value="regions"/>
+                    <repeat name="regions">
+                        <param name="chrom" value="Y" />
+                        <param name="start" value="20" />
+                    </repeat>
+                </conditional>
+            </section>
             <param name="output_type" value="v" />
             <output name="output_file">
                 <assert_contents>
@@ -268,11 +270,19 @@
             <param name="private" value="--exclude-private" />
             <param name="apply_filters" value="PASS" />
             <param name="samples" value="NA00003" />
-            <param name="regions" value="20,Y" />
+            <section name="sec_restrict">
+                <conditional name="regions">
+                    <param name="regions_src" value="regions"/>
+                    <repeat name="regions">
+                        <param name="chrom" value="Y" />
+                        <param name="start" value="20" />
+                    </repeat>
+                </conditional>
+            </section>
             <param name="output_type" value="v" />
             <output name="output_file">
                 <assert_contents>
-                    <has_text text="rs6111385" />
+                    <has_text text="Minimum number of alternate bases" />
                     <not_has_text text="8657215" />
                 </assert_contents>
             </output>
--- a/macros.xml	Thu Sep 29 08:49:13 2022 +0000
+++ b/macros.xml	Thu Jan 12 15:37:29 2023 +0000
@@ -1,6 +1,6 @@
 <macros>
   <token name="@TOOL_VERSION@">1.15.1</token>
-  <token name="@VERSION_SUFFIX@">2</token>
+  <token name="@VERSION_SUFFIX@">3</token>
   <token name="@PROFILE@">20.01</token>
   <xml name="bio_tools">
       <xrefs>