Mercurial > repos > iuc > bctools_extract_alignment_ends

comparison test-data/twomates.sam @ 0:0e70f9058b02 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ae3b9baaf7040ed8b165d17466b8b2fe016d3d48
author iuc
date Tue, 14 Nov 2017 05:53:02 -0500
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-1:000000000000 0:0e70f9058b02
1 @HD VN:1.0 SO:unsorted
2 @SQ SN:chr1 LN:249250621
3 @PG ID:bowtie2 PN:bowtie2 VN:2.2.0 CL:"/usr/local/user/bowtie2/bowtie2-2.2.0/bowtie2-align-s --wrapper basic-0 --very-sensitive --end-to-end --no-mixed --no-discordant --fr --omit-sec-seq --minins=0 --maxins=200 --threads 24 --time -x ../genome/hg19/hg19 --passthrough -1 /tmp/10410.inpipe1 -2 /tmp/10410.inpipe2"
4 39V34V1:167:HAWHUADXX:1:1101:19513:10724 99 chr1 45244081 40 41M = 45244081 -41 GTCCAGTTCTGCTACCGACAGTAAGTGAAGATAAAGTGTGT FFFIIIFIIIIIIFIIIIIIIFIIIBFFIIIIIIIIFFFFF AS:i:-6 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 MD:Z:15T25 YS:i:-6 YT:Z:CP
5 39V34V1:167:HAWHUADXX:1:1101:19513:10724 147 chr1 45244081 40 41M = 45244081 -41 GTCCAGTTCTGCTACCGACAGTAAGTGAAGATAAAGTGTGT IFIIFIIIFIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFF AS:i:-6 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 MD:Z:15T25 YS:i:-6 YT:Z:CP