Mercurial > repos > iuc > bctools_remove_spurious_events

comparison rm_spurious_events.xml @ 4:308ab6387c75 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit a6a6774ae353f915a5ca34af8f281edd91e5c665
author iuc
date Fri, 04 Oct 2024 08:57:01 +0000
parents 5c72eb992651
children
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3:5c72eb992651 4:308ab6387c75
1 <tool id="bctools_remove_spurious_events" name="Remove spurious" version="@VERSION@+galaxy1"> 1 <tool id="bctools_remove_spurious_events" name="Remove spurious" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>crosslinking events</description> 2 <description>crosslinking events</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"> 6 <expand macro="requirements">
12 --threshold '$threshold' 12 --threshold '$threshold'
13 --outfile '$events_filtered' 13 --outfile '$events_filtered'
14 ]]></command> 14 ]]></command>
15 <inputs> 15 <inputs>
16 <param name="events" type="data" format="bed" label="BED6 file containing alignments"/> 16 <param name="events" type="data" format="bed" label="BED6 file containing alignments"/>
17 <param name="threshold" argument="--threshold" type="float" value="0.1" optional="true" label="Threshold for spurious event removal" help="Remove all crosslinking events that combine less reads than this fraction of the maximum number of reads at this position."/> 17 <param argument="--threshold" type="float" value="0.1" optional="true" label="Threshold for spurious event removal" help="Remove all crosslinking events that combine less reads than this fraction of the maximum number of reads at this position."/>
18 </inputs> 18 </inputs>
19 <outputs> 19 <outputs>
20 <data name="events_filtered" format="bed"/> 20 <data name="events_filtered" format="bed"/>
21 </outputs> 21 </outputs>
22 <tests> 22 <tests>