Mercurial > repos > iuc > bctools_remove_spurious_events

changeset 4:308ab6387c75 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit a6a6774ae353f915a5ca34af8f281edd91e5c665
author iuc
date Fri, 04 Oct 2024 08:57:01 +0000
parents 5c72eb992651
children
files macros.xml rm_spurious_events.xml
diffstat 2 files changed, 6 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Wed Jan 15 17:12:22 2020 -0500
+++ b/macros.xml	Fri Oct 04 08:57:01 2024 +0000
@@ -1,11 +1,13 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="@VERSION@">bctools</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">bctools</requirement>
             <yield/>
         </requirements>
     </xml>
-    <token name="@VERSION@">0.2.2</token>
+    <token name="@TOOL_VERSION@">0.2.2</token>
+    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@PROFILE@">23.1</token>
     <xml name="citations">
         <citations>
             <citation type="doi">10.1016/j.molcel.2013.07.001</citation>
--- a/rm_spurious_events.xml	Wed Jan 15 17:12:22 2020 -0500
+++ b/rm_spurious_events.xml	Fri Oct 04 08:57:01 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="bctools_remove_spurious_events" name="Remove spurious" version="@VERSION@+galaxy1">
+<tool id="bctools_remove_spurious_events" name="Remove spurious" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>crosslinking events</description>
     <macros>
         <import>macros.xml</import>
@@ -14,7 +14,7 @@
     ]]></command>
     <inputs>
         <param name="events" type="data" format="bed" label="BED6 file containing alignments"/>
-        <param name="threshold" argument="--threshold" type="float" value="0.1" optional="true" label="Threshold for spurious event removal" help="Remove all crosslinking events that combine less reads than this fraction of the maximum number of reads at this position."/>
+        <param argument="--threshold" type="float" value="0.1" optional="true" label="Threshold for spurious event removal" help="Remove all crosslinking events that combine less reads than this fraction of the maximum number of reads at this position."/>
     </inputs>
     <outputs>
         <data name="events_filtered" format="bed"/>