Mercurial > repos > iuc > beacon2_pxf2bff
diff test-data/EGAF00005572887.json @ 0:30605b5fc43f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2 commit dcaf8046840f163143075b276dd75909d344ec3a
| author | iuc |
|---|---|
| date | Sun, 01 Oct 2023 16:31:09 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/EGAF00005572887.json Sun Oct 01 16:31:09 2023 +0000 @@ -0,0 +1,174 @@ +{ + "phenopacket": { + "id": "P0008909", + "subject": { + "id": "P0008909", + "dateOfBirth": "1982-01-01T00:00:00Z", + "sex": "FEMALE" + }, + "phenotypicFeatures": [ + { + "negated": true, + "type": { + "id": "HP:0000144", + "label": "Decreased fertility" + } + }, + { + "negated": true, + "type": { + "id": "HP:0003003", + "label": "Colon cancer" + } + }, + { + "type": { + "id": "HP:0003002", + "label": "Breast carcinoma" + } + }, + { + "type": { + "id": "HP:0100013", + "label": "Neoplasm of the breast" + } + } + ], + "diseases": [ + { + "term": { + "id": "Orphanet:145", + "label": "Hereditary breast and ovarian cancer syndrome" + } + } + ], + "genes": [], + "variants": [], + "meta_data": { + "created": "2021-04-21T09:45:31.121Z", + "resources": [ + { + "id": "hp", + "name": "Human Phenotype Ontology", + "url": "http://purl.obolibrary.org/obo/hp.owl", + "version": "2020-12-07", + "namespacePrefix": "HP", + "iriPrefix": "http://purl.obolibrary.org/obo/HP_" + }, + { + "id": "orphanet", + "name": "Orphanet Rare Disease Ontology", + "url": "http://orpha.net/ontology/ORDO_en_3.1.owl", + "version": "3.1", + "namespacePrefix": "Orphanet", + "iriPrefix": "http://www.orpha.net/ORDO/Orphanet_" + }, + { + "id": "hgnc", + "name": "HUGO Gene Nomenclature Committee", + "url": "https://www.genenames.org", + "version": "2021-01-13", + "namespacePrefix": "HGNC", + "iriPrefix": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/" + }, + { + "id": "mim", + "name": "Online Mendelian Inheritance in Man", + "url": "https://omim.org/", + "version": "2021-01-21", + "namespacePrefix": "OMIM", + "iriPrefix": "https://omim.org/entry/" + } + ] + } + }, + "interpretation": { + "id": "P0008909", + "resolutionStatus": "UNSOLVED", + "phenopacket": { + "id": "P0008909", + "subject": { + "id": "P0008909", + "dateOfBirth": "1982-01-01T00:00:00Z", + "sex": "FEMALE" + }, + "phenotypicFeatures": [ + { + "negated": true, + "type": { + "id": "HP:0000144", + "label": "Decreased fertility" + } + }, + { + "negated": true, + "type": { + "id": "HP:0003003", + "label": "Colon cancer" + } + }, + { + "type": { + "id": "HP:0003002", + "label": "Breast carcinoma" + } + }, + { + "type": { + "id": "HP:0100013", + "label": "Neoplasm of the breast" + } + } + ], + "diseases": [ + { + "term": { + "id": "Orphanet:145", + "label": "Hereditary breast and ovarian cancer syndrome" + } + } + ], + "genes": [], + "variants": [], + "meta_data": { + "created": "2021-04-21T09:45:31.121Z", + "resources": [ + { + "id": "hp", + "name": "Human Phenotype Ontology", + "url": "http://purl.obolibrary.org/obo/hp.owl", + "version": "2020-12-07", + "namespacePrefix": "HP", + "iriPrefix": "http://purl.obolibrary.org/obo/HP_" + }, + { + "id": "orphanet", + "name": "Orphanet Rare Disease Ontology", + "url": "http://orpha.net/ontology/ORDO_en_3.1.owl", + "version": "3.1", + "namespacePrefix": "Orphanet", + "iriPrefix": "http://www.orpha.net/ORDO/Orphanet_" + }, + { + "id": "hgnc", + "name": "HUGO Gene Nomenclature Committee", + "url": "https://www.genenames.org", + "version": "2021-01-13", + "namespacePrefix": "HGNC", + "iriPrefix": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/" + }, + { + "id": "mim", + "name": "Online Mendelian Inheritance in Man", + "url": "https://omim.org/", + "version": "2021-01-21", + "namespacePrefix": "OMIM", + "iriPrefix": "https://omim.org/entry/" + } + ] + } + }, + "diagnosis": [], + "meta_data": {} + } +} \ No newline at end of file