|
0
|
1 <tool id="bedtools_expandbed" name="ExpandBed" version="@WRAPPER_VERSION@.0">
|
|
|
2 <description></description>
|
|
|
3 <macros>
|
|
|
4 <import>macros.xml</import>
|
|
|
5 </macros>
|
|
|
6 <expand macro="requirements" />
|
|
|
7 <expand macro="stdio" />
|
|
|
8 <command>
|
|
1
|
9 <![CDATA[
|
|
0
|
10 bedtools expand
|
|
1
|
11 -c "${cols}"
|
|
|
12 -i "${input}"
|
|
|
13 > "${output}"
|
|
|
14 ]]>
|
|
0
|
15 </command>
|
|
|
16 <inputs>
|
|
1
|
17 <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/>
|
|
|
18 <expand macro="choose_columns" />
|
|
0
|
19 </inputs>
|
|
|
20 <outputs>
|
|
1
|
21 <data name="output" metadata_source="input" format_source="input" />
|
|
0
|
22 </outputs>
|
|
1
|
23 <tests>
|
|
|
24 <test>
|
|
|
25 <param name="input" value="expandBed1.bed" ftype="bed" />
|
|
|
26 <param name="cols" value="5"/>
|
|
|
27 <output name="output" file="expandBed_result1.bed" ftype="bed" />
|
|
|
28 </test>
|
|
|
29 <test>
|
|
|
30 <param name="input" value="expandBed1.bed" ftype="bed" />
|
|
|
31 <param name="cols" value="4,5"/>
|
|
|
32 <output name="output" file="expandBed_result2.bed" ftype="bed" />
|
|
|
33 </test>
|
|
|
34 </tests>
|
|
0
|
35 <help>
|
|
1
|
36 <![CDATA[
|
|
0
|
37 **What it does**
|
|
|
38
|
|
|
39 Replicate lines in a file based on columns of comma-separated values.
|
|
|
40
|
|
|
41 @REFERENCES@
|
|
1
|
42 ]]>
|
|
0
|
43 </help>
|
|
|
44 <expand macro="citations" />
|
|
|
45 </tool>
|
