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annotate bed12ToBed6.xml @ 37:ce3c7f062223 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 8e072170dd8f7b68fabbf29b1b0d7d14974b8b22"
author iuc
date Tue, 23 Mar 2021 20:23:14 +0000
parents dde39ba9c031
children 3e38c9b3214f
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dde39ba9c031 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b68002321ade5e160c556517a98ffb70f068be95
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1 <tool id="bedtools_bed12tobed6" name="bedtools BED12 to BED6" version="@TOOL_VERSION@">
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2 <description>converter</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements" />
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7 <expand macro="stdio" />
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8 <command><![CDATA[
dde39ba9c031 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b68002321ade5e160c556517a98ffb70f068be95
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9 bed12ToBed6
dde39ba9c031 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b68002321ade5e160c556517a98ffb70f068be95
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10 -i '$input'
dde39ba9c031 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b68002321ade5e160c556517a98ffb70f068be95
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11 > '$output'
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12 ]]></command>
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13 <inputs>
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14 <param name="input" argument="-i" type="data" format="bed" label="Convert the following BED12 file to BED6"/>
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15 </inputs>
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16 <outputs>
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17 <data name="output" format="bed" metadata_source="input" label="${input.name} (as BED6)"/>
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18 </outputs>
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19 <tests>
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20 <test>
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21 <param name="input" value="bed12.bed" ftype="bed" />
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22 <output name="output" file="bed12ToBed6_result1.bed" ftype="bed" />
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23 </test>
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24 </tests>
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25 <help><![CDATA[
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26 **What it does**
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28 bed12ToBed6 is a convenience tool that converts BED features in BED12 (a.k.a. “blocked” BED features such as genes) to discrete BED6 features. For example, in the case of a gene with six exons, bed12ToBed6 would create six separate BED6 features (i.e., one for each exon).
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30 @REFERENCES@
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31 ]]></help>
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32 <expand macro="citations" />
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33 </tool>