Mercurial > repos > iuc > bedtools

comparison bedToBam.xml @ 43:07e8b80f278c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit db0b91a784ca0c216345bc488d7d488babf1b53f"
author iuc
date Fri, 01 Apr 2022 19:02:51 +0000
parents 7ab85ac5f64b
children 64e2edfe7a2c
comparison
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42:841fb4dc3ab3 43:07e8b80f278c
1 <tool id="bedtools_bedtobam" name="bedtools BED to BAM" version="@TOOL_VERSION@" profile="@PROFILE@"> 1 <tool id="bedtools_bedtobam" name="bedtools BED to BAM" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
2 <description>converter</description> 2 <description>converter</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools" /> 6 <expand macro="bio_tools" />
8 <expand macro="stdio" /> 8 <expand macro="stdio" />
9 <command><![CDATA[ 9 <command><![CDATA[
10 bedtools bedtobam 10 bedtools bedtobam
11 $bed12 11 $bed12
12 -mapq $mapq 12 -mapq $mapq
13 -g @GENOME_FILE@ 13 @GENOME_FILE@
14 -i '$input' 14 -i '$input'
15 > '$output' 15 > '$output'
16 ]]></command> 16 ]]></command>
17 <inputs> 17 <inputs>
18 <param name="input" argument="-i" type="data" format="bed" label="Convert the following BED file to BAM"/> 18 <param name="input" argument="-i" type="data" format="bed" label="Convert the following BED file to BAM"/>