Mercurial > repos > iuc > bedtools
comparison test-data/dbkeys.loc @ 43:07e8b80f278c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit db0b91a784ca0c216345bc488d7d488babf1b53f"
| author | iuc |
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| date | Fri, 01 Apr 2022 19:02:51 +0000 |
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| 42:841fb4dc3ab3 | 43:07e8b80f278c |
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| 1 #This file lists the locations and dbkeys of all the genome files | |
| 2 #See here for details: http://bedtools.readthedocs.io/en/latest/content/general-usage.html#genome-file-format | |
| 3 #You can add elements to this data table using the data_manager_fetch_genome_dbkeys_all_fasta data manager. | |
| 4 #Alternatively, index files created using samtools faidx (http://www.htslib.org/doc/faidx.html) contain 3 extra columns, but work fine. | |
| 5 #This file has the format (white space characters are TAB characters): | |
| 6 # | |
| 7 #<dbkey> <display_name> <file_path> | |
| 8 # | |
| 9 #So, dbkeys.loc could look something like this: | |
| 10 # | |
| 11 #apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.len | |
| 12 #hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.len | |
| 13 # | |
| 14 mm9 Mus Musculus ${__HERE__}/mm9.len |