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comparison complementBed.xml @ 17:44867b59dbf2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit cf7a3674bc833bbd5fdd2ad02e724935ffc7a174
author iuc
date Tue, 05 Sep 2017 15:40:14 -0400
parents 607c0576c6ab
children a8eabd2838f6
comparison
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16:e0cec48a4695 17:44867b59dbf2
1 <tool id="bedtools_complementbed" name="ComplementBed" version="@WRAPPER_VERSION@.0"> 1 <tool id="bedtools_complementbed" name="ComplementBed" version="@WRAPPER_VERSION@.1">
2 <description>Extract intervals not represented by an interval file</description> 2 <description>Extract intervals not represented by an interval file</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command> 8 <command>
9 <![CDATA[ 9 <![CDATA[
10 complementBed 10 complementBed
11 -i "$input" 11 -i "$input"
12 -g "$genome" 12 -g @GENOME_FILE@
13 > "$output" 13 > "$output"
14 ]]> 14 ]]>
15 </command> 15 </command>
16 <inputs> 16 <inputs>
17 <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/> 17 <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/>
18 <expand macro="genome" /> 18 <expand macro="input_conditional_genome_file" />
19 </inputs> 19 </inputs>
20 <outputs> 20 <outputs>
21 <data format_source="input" name="output" metadata_source="input" label="Complemen of ${input.name}"/> 21 <data format_source="input" name="output" metadata_source="input" label="Complemen of ${input.name}"/>
22 </outputs> 22 </outputs>
23 <tests> 23 <tests>
24 <test> 24 <test>
25 <param name="input" value="a.bed" ftype="bed" /> 25 <param name="input" value="a.bed" ftype="bed" />
26 <param name="genome_file_opts_selector" value="hist" />
26 <param name="genome" value="mm9_chr1.len" /> 27 <param name="genome" value="mm9_chr1.len" />
27 <output name="output" file="complementBed_result1.bed" ftype="bed" /> 28 <output name="output" file="complementBed_result1.bed" ftype="bed" />
28 </test> 29 </test>
29 </tests> 30 </tests>
30 <help> 31 <help>