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comparison sortBed.xml @ 44:589e7e57fd6d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 03a91f6c42c75dc36d09505c2e6a2236178e4695
author iuc
date Mon, 20 Feb 2023 21:49:48 +0000
parents 07e8b80f278c
children 64e2edfe7a2c
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43:07e8b80f278c 44:589e7e57fd6d
1 <tool id="bedtools_sortbed" name="bedtools SortBED" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> 1 <tool id="bedtools_sortbed" name="bedtools SortBED" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
2 <description>order the intervals</description> 2 <description>order the intervals</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools" /> 6 <expand macro="bio_tools" />
23 <option value="-chrThenSizeA">chromosome, then by feature size (asc).</option> 23 <option value="-chrThenSizeA">chromosome, then by feature size (asc).</option>
24 <option value="-chrThenSizeD">chromosome, then by feature size (desc).</option> 24 <option value="-chrThenSizeD">chromosome, then by feature size (desc).</option>
25 <option value="-chrThenScoreA">chromosome, then by score (asc).</option> 25 <option value="-chrThenScoreA">chromosome, then by score (asc).</option>
26 <option value="-chrThenScoreD">chromosome, then by score (desc).</option> 26 <option value="-chrThenScoreD">chromosome, then by score (desc).</option>
27 </param> 27 </param>
28 <expand macro="input_conditional_genome_file" help="Sort according to the chromosomes declared in a genome file" /> 28 <expand macro="input_conditional_genome_file" optional="true" help="Sort according to the chromosomes declared in a genome file" />
29 </inputs> 29 </inputs>
30 <outputs> 30 <outputs>
31 <data name="output" format_source="input" metadata_source="input" label="SortBed on ${input.name}"/> 31 <data name="output" format_source="input" metadata_source="input" label="SortBed on ${input.name}"/>
32 </outputs> 32 </outputs>
33 <tests> 33 <tests>