Mercurial > repos > iuc > bedtools

comparison genomeCoverageBed.xml @ 4:607c0576c6ab draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 6692e3a4fa1bf6e9a407735afdbb2454ed32b316
author iuc
date Wed, 27 Jan 2016 15:15:59 -0500
parents 457b09031d57
children 8e6b7c3597a8
comparison
equal deleted inserted replaced
3:2cd7e321d259 4:607c0576c6ab
1 <tool id="bedtools_genomecoveragebed" name="Genome Coverage" version="@WRAPPER_VERSION@.0"> 1 <tool id="bedtools_genomecoveragebed" name="Genome Coverage" version="@WRAPPER_VERSION@.0">
2 <description>in bedGraph or histogram format</description> 2 <description>compute the coverage over an entire genome</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
72 72
73 <param name="d" type="boolean" checked="False" truevalue="-d" falsevalue="" 73 <param name="d" type="boolean" checked="False" truevalue="-d" falsevalue=""
74 label="Report the depth at each genome position with 1-based coordinates" help="(-d)" /> 74 label="Report the depth at each genome position with 1-based coordinates" help="(-d)" />
75 <param name="dz" type="boolean" checked="False" truevalue="-dz" falsevalue="" 75 <param name="dz" type="boolean" checked="False" truevalue="-dz" falsevalue=""
76 label="Report the depth at each genome position with 0-based coordinatess" help="(-dz)" /> 76 label="Report the depth at each genome position with 0-based coordinatess" help="(-dz)" />
77 <param name="five" type="boolean" checked="False" truevalue="-d" falsevalue="" 77 <param name="five" type="boolean" checked="False" truevalue="-5" falsevalue=""
78 label="Calculate coverage of 5’ positions" help="Instead of entire interval. (-5)" /> 78 label="Calculate coverage of 5’ positions" help="Instead of entire interval. (-5)" />
79 <param name="three" type="boolean" checked="False" truevalue="-3" falsevalue="" 79 <param name="three" type="boolean" checked="False" truevalue="-3" falsevalue=""
80 label="Calculate coverage of 3’ positions" help="Instead of entire interval. (-3)" /> 80 label="Calculate coverage of 3’ positions" help="Instead of entire interval. (-3)" />
81 </inputs> 81 </inputs>
82 <outputs> 82 <outputs>