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comparison mapBed.xml @ 4:607c0576c6ab draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 6692e3a4fa1bf6e9a407735afdbb2454ed32b316
author iuc
date Wed, 27 Jan 2016 15:15:59 -0500
parents 2cd7e321d259
children 7308cc546a36
comparison
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3:2cd7e321d259 4:607c0576c6ab
1 <tool id="bedtools_map" name="MapBed" version="@WRAPPER_VERSION@.1"> 1 <tool id="bedtools_map" name="MapBed" version="@WRAPPER_VERSION@.1">
2 <description></description> 2 <description>apply a function to a column for each overlapping interval</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
39 <param name="genome_choose" type="boolean" checked="false" truevalue="-g" falsevalue="" 39 <param name="genome_choose" type="boolean" checked="false" truevalue="-g" falsevalue=""
40 label="Treat split/spliced BAM or BED12 entries as distinct BED intervals when computing coverage." help="(-g)" /> 40 label="Treat split/spliced BAM or BED12 entries as distinct BED intervals when computing coverage." help="(-g)" />
41 <when value="-g"> 41 <when value="-g">
42 <expand macro="genome" /> 42 <expand macro="genome" />
43 </when> 43 </when>
44 <when value="" />
44 </conditional> 45 </conditional>
45 </inputs> 46 </inputs>
46 <outputs> 47 <outputs>
47 <data format_source="inputA" name="output" metadata_source="inputA" label="Mapping of ${inputB.name} into ${inputA.name}"/> 48 <data format_source="inputA" name="output" metadata_source="inputA" label="Mapping of ${inputB.name} into ${inputA.name}"/>
48 </outputs> 49 </outputs>