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comparison makeWindowsBed.xml @ 11:7308cc546a36 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:35 -0400
parents 607c0576c6ab
children 44867b59dbf2
comparison
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10:c78cf6fe3018 11:7308cc546a36
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command> 8 <command>
9 <![CDATA[ 9 <![CDATA[
10 bedtools makewindows 10 bedtools makewindows
11 #if $type.type_select == 'genome': 11 #if $type.type_select == 'genome':
12 -g $type.genome 12 -g '$type.genome'
13 #else: 13 #else:
14 -b $type.input 14 -b '$type.input'
15 #end if 15 #end if
16 #if $action.action_select == 'windowsize': 16 #if $action.action_select == 'windowsize':
17 -w $action.windowsize 17 -w $action.windowsize
18 #if $action.step_size.step_size_select == 'yes': 18 #if $action.step_size.step_size_select == 'yes':
19 -s $action.step_size.step_size 19 -s $action.step_size.step_size
21 #else: 21 #else:
22 -n $action.number 22 -n $action.number
23 -s $action.step_size 23 -s $action.step_size
24 #end if 24 #end if
25 $sourcename 25 $sourcename
26 > $output 26 > '$output'
27 ]]> 27 ]]>
28 </command> 28 </command>
29 <inputs> 29 <inputs>
30 <conditional name="type"> 30 <conditional name="type">
31 <param name="type_select" type="select" label="Work with"> 31 <param name="type_select" type="select" label="Work with">