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comparison mapBed.xml @ 11:7308cc546a36 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:35 -0400
parents 607c0576c6ab
children 44867b59dbf2
comparison
equal deleted inserted replaced
10:c78cf6fe3018 11:7308cc546a36
1 <tool id="bedtools_map" name="MapBed" version="@WRAPPER_VERSION@.1"> 1 <tool id="bedtools_map" name="MapBed" version="@WRAPPER_VERSION@.0">
2 <description>apply a function to a column for each overlapping interval</description> 2 <description>apply a function to a column for each overlapping interval</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
24 </command> 24 </command>
25 <inputs> 25 <inputs>
26 <param format="bam,bed,vcf,gff,gff3" name="inputA" type="data" label="File A (BAM/BED/VCF/GFF)" /> 26 <param format="bam,bed,vcf,gff,gff3" name="inputA" type="data" label="File A (BAM/BED/VCF/GFF)" />
27 <param format="bam,bed,gff,vcf,gff3" name="inputB" type="data" label="File B (BAM/BED/VCF/GFF)" /> 27 <param format="bam,bed,gff,vcf,gff3" name="inputB" type="data" label="File B (BAM/BED/VCF/GFF)" />
28 <expand macro="overlap" /> 28 <expand macro="overlap" />
29 <param name="reciprocal" type="boolean" checked="false" truevalue="-r" falsevalue="" 29 <param name="reciprocal" type="boolean" checked="false" truevalue="-r" falsevalue=""
30 label="Require reciprocal overlap" 30 label="Require reciprocal overlap"
31 help="If set, the overlap between the BAM alignment and the BED interval must affect the above fraction of both the alignment and the BED interval. (-r)" /> 31 help="If set, the overlap between the BAM alignment and the BED interval must affect the above fraction of both the alignment and the BED interval. (-r)" />
32 <expand macro="strand2" /> 32 <expand macro="strand2" />
33 <expand macro="c_and_o_argument"> 33 <expand macro="c_and_o_argument">
34 <param name="col" type="data_column" data_ref="inputA" label="Specify the column(s) that should be summarized" help="(-c)" /> 34 <param name="col" type="data_column" data_ref="inputA" label="Specify the column(s) that should be summarized" help="(-c)" />