Mercurial > repos > iuc > bedtools
comparison bed12ToBed6.xml @ 1:82aac94b06c3 draft
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| author | iuc |
|---|---|
| date | Thu, 08 Jan 2015 14:25:51 -0500 |
| parents | |
| children | 4f7a5ccd2ae9 |
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| 0:b8348686a0b9 | 1:82aac94b06c3 |
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| 1 <tool id="bedtools_bed12tobed6" name="BED12 to BED6" version="@WRAPPER_VERSION@.0"> | |
| 2 <description>converter</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <expand macro="stdio" /> | |
| 8 <command> | |
| 9 <![CDATA[ | |
| 10 bed12ToBed6 | |
| 11 -i '$input' | |
| 12 > '$output' | |
| 13 ]]> | |
| 14 </command> | |
| 15 <inputs> | |
| 16 <param format="bed" name="input" type="data" label="Convert the following BED12 file to BED6"/> | |
| 17 </inputs> | |
| 18 <outputs> | |
| 19 <data format="bed" name="output" metadata_source="input" label="${input.name} (as BED6)"/> | |
| 20 </outputs> | |
| 21 <tests> | |
| 22 <test> | |
| 23 <param name="input" value="bed12.bed" ftype="bed" /> | |
| 24 <output name="output" file="bed12ToBed6_result1.bed" ftype="bed" /> | |
| 25 </test> | |
| 26 </tests> | |
| 27 <help> | |
| 28 <![CDATA[ | |
| 29 **What it does** | |
| 30 | |
| 31 bed12ToBed6 is a convenience tool that converts BED features in BED12 (a.k.a. “blocked” BED features such as genes) to discrete BED6 features. For example, in the case of a gene with six exons, bed12ToBed6 would create six separate BED6 features (i.e., one for each exon). | |
| 32 | |
| 33 @REFERENCES@ | |
| 34 ]]> | |
| 35 </help> | |
| 36 <expand macro="citations" /> | |
| 37 </tool> |